L-アスパラギン酸

L-アスパラギン酸

by 孝昌 野中 -

\tdplotsetmaincoords{40}{5}\begin{tikzpicture}[scale=1,tdplot_main_coords,rotate=60,declare function = {opc=0.9;_cell.entry_id = L-AsparticAcid_652520;_cell.length_a = 5.114;_cell.length_b = 6.906;_cell.length_c = 7.593;_cell.angle_alpha = 90.00;_cell.angle_beta = 100.66;_cell.angle_gamma = 90.00;_symmetry.space_group_name_H-M = 'P 21';Cvdw=1.70 cm; Nvdw=1.55 cm; Ovdw=1.52 cm; Hvdw=1.20 cm; Bvdw=1.92 cm; Clvdw=1.75 cm; Fvdw=1.47 cm; Svdw=1.80 cm; Brvdw=1.85 cm; Ivdw=1.98 cm; Ptvdw=1.75 cm;vdw=1/5; lw=3;x0=3.353875;y0=5.448188;z0=1.7965;}]\coordinate (CA) at (2.831-x0, 5.773-y0, 2.203-z0);\coordinate (CB) at (3.350-x0, 4.447-y0, 1.640-z0);\coordinate (CG) at (4.002-x0, 4.551-y0, 0.282-z0);\coordinate (OD1) at (5.112-x0, 4.095-y0, 0.063-z0);\coordinate (OD2) at (3.250-x0, 5.138-y0, -0.626-z0);\coordinate (CT) at (2.194-x0, 5.497-y0, 3.571-z0);\coordinate (NT) at (3.945-x0, 6.754-y0, 2.359-z0);\coordinate (OT1) at (2.977-x0, 5.414-y0, 4.548-z0);\coordinate (OT2) at (0.951-x0, 5.324-y0, 3.594-z0);\coordinate (HA) at (2.102-x0, 6.201-y0, 1.545-z0);\coordinate (HB1) at (4.065-x0, 3.992-y0, 2.335-z0);\coordinate (HB2) at (2.476-x0, 3.840-y0, 1.545-z0);\coordinate (HD) at (3.757-x0, 5.179-y0, -1.515-z0);\coordinate (H1) at (4.717-x0, 6.312-y0, 2.895-z0);\coordinate (H2) at (3.595-x0, 7.596-y0, 2.902-z0);\coordinate (H3) at (4.338-x0, 7.058-y0, 1.403-z0);\foreach \labelx /\labely in {NT/H1, NT/H2, NT/H3, CA/HA, CB/HB1, CB/HB2, OD2/HD} \draw[line width = lw, Pink1] (\labelx) -- (\labely);\draw[line width = lw, gray] (CT) -- (CA) -- (CB) -- (CG);\draw[line width = lw, gray] (NT) -- (CA);\draw[line width = lw, gray] (CG) -- (OD2); \draw[line width = lw, green] (OT1) -- (CT) -- (OT2);\foreach \labelx /\labely in {CG/OD1}{ \draw[line width = lw, cyan] (\labelx) to [bend left] (\labely); \draw[line width = lw, cyan] (\labelx) to [bend right] (\labely);}\foreach \label in {H1, H2, H3, HA, HB1, HB2, HD}\shade[ball color = white, opacity=opc] (\label) circle (vdw*Hvdw);\foreach \label in {CT, CA, CB, CG}\shade[ball color = black, opacity=opc] (\label) circle (vdw*Cvdw);\foreach \label in {NT}\shade[ball color = blue, opacity=opc] (\label) circle (vdw*Nvdw);\foreach \label in {OD1, OD2, OT1, OT2}\shade[ball color = red, opacity=opc] (\label) circle (vdw*Nvdw);\end{tikzpicture}